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docs/source/en/padding_free.md
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docs/source/en/padding_free.md
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<!--Copyright 2026 The HuggingFace Team. All rights reserved.
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Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
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the License. You may obtain a copy of the License at
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http://www.apache.org/licenses/LICENSE-2.0
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Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on
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an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the
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specific language governing permissions and limitations under the License.
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⚠️ Note that this file is in Markdown but contain specific syntax for our doc-builder (similar to MDX) that may not be
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rendered properly in your Markdown viewer.
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-->
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# Padding-free training
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Padding-free training (also called packing) concatenates several samples into a single sequence instead of padding each one to a fixed length. The model needs to know where each sample ends so (linear) attention doesn't mix tokens across samples.
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There are two ways to provide those boundaries.
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- Prepare them ahead of time with a data collator.
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- Infer them from `position_ids` at runtime.
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The recommended approach is the data collator. This guide explains why and covers the caveats of the `position_ids` path.
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> [!WARNING]
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> Inferring boundaries from `position_ids` is not the preferred approach, and it only works for standard attention models. Linear-attention models such as Qwen3-Next and Qwen3.5 (Gated DeltaNet) and convolution-based models ignore `position_ids` boundaries and require the data collator. See [Linear attention and convolution models](#linear-attention-and-convolution-models).
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## Prepare boundaries with a data collator
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Preparing the boundary kwargs up front removes the problems above and behaves identically whether or not you compile.
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Use [`DataCollatorWithFlattening`] to flatten each batch and return the boundary information. Set `return_flash_attn_kwargs=True` so the collator precomputes the boundaries instead of leaving them to be inferred from `position_ids` at runtime. Pass it to [`Trainer`] and don't add an `attention_mask`, since the flattened batch already encodes the boundaries and a mask conflicts with the packed layout.
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> [!TIP]
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> Padding-free relies on a FlashAttention implementation for standard attention models, since only the FlashAttention kernels expose the variable-length path that a flattened batch needs.
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>
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> Install the [kernels](./kernels) library, which fetches a prebuilt FlashAttention kernel without requiring a local build. It also works as a fallback when [flash-attn](https://github.com/Dao-AILab/flash-attention) isn't installed locally. Load the model with `attn_implementation="kernels-community/flash-attn2"`.
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```python
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import torch
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from datasets import load_dataset
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from transformers import AutoModelForCausalLM, AutoTokenizer, DataCollatorWithFlattening, Trainer, TrainingArguments
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model_id = "meta-llama/Llama-3.2-1B"
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tokenizer = AutoTokenizer.from_pretrained(model_id)
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model = AutoModelForCausalLM.from_pretrained(
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model_id,
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attn_implementation="flash_attention_2",
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device_map="auto",
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)
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dataset = load_dataset("Salesforce/wikitext", "wikitext-2-raw-v1", split="train")
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dataset = dataset.map(
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lambda example: tokenizer(example["text"], truncation=True, max_length=512),
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remove_columns=dataset.column_names,
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)
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# return_flash_attn_kwargs=True precomputes the sequence boundaries
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data_collator = DataCollatorWithFlattening(return_flash_attn_kwargs=True)
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trainer = Trainer(
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model=model,
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args=TrainingArguments(output_dir="padding-free-llama"),
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train_dataset=dataset,
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data_collator=data_collator,
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)
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trainer.train()
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```
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## Infer boundaries from position_ids
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FlashAttention can detect padding-free batches from `position_ids` alone and remains for backward compatibility, because downstream frameworks such as TRL depend on it.
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Relying on `position_ids` has two problems.
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- Detecting packed sequences from `position_ids` is a dynamic, data-dependent check. It works without compilation, but under `torch.compile` it causes graph breaks. The check is currently restricted to `batch_size == 1` to limit how often it runs, since real batch sizes are usually larger.
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- Compiled FlashAttention forces some kwargs to be plain Python `int`s. Inferring them from `position_ids` at runtime forces device-to-host syncs, and on older PyTorch versions an extra graph break from the tensor-to-int conversion.
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## Linear attention and convolution models
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Gated DeltaNet (GDN), other linear-attention layers, and causal convolutions have no `position_ids`-only path, by design. Preparing the data with the collator is the only supported option for these models.
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> [!WARNING]
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> Don't rely on `position_ids` alone for GDN, linear-attention, or causal convolution models. Prepare the boundary kwargs, including `seq_idx`, with the data collator.
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For these models, set both `return_flash_attn_kwargs=True` and `return_seq_idx=True`.
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```python
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from transformers import DataCollatorWithFlattening
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data_collator = DataCollatorWithFlattening(
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return_flash_attn_kwargs=True,
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return_seq_idx=True,
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)
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```
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The exact kernel packages depend on the model's original implementation. Gated DeltaNet models such as Qwen3-Next and Qwen3.5 use [flash-linear-attention](https://github.com/fla-org/flash-linear-attention), and Mamba-based models such as Bamba use [mamba-ssm](https://github.com/state-spaces/mamba). Both rely on [causal-conv1d](https://github.com/Dao-AILab/causal-conv1d) for the convolution. Without the right kernels, the model falls back to reference implementations that ignore the boundary kwargs and mix tokens across samples.
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> [!TIP]
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> Many of these kernels are also available through the [kernels](./kernels) library, which can fetch a compatible build for you. flash-linear-attention typically still needs a direct install.
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When the boundary kwargs are missing, the kernels quietly treat the whole batch as one sequence. Nothing raises an error or warning, because a runtime check would add a data-dependent branch that conflicts with `torch.compile`.
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## Next steps
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- See the [data collators](./data_collators) guide for other collators.
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- Browse the [`DataCollatorWithFlattening`] API reference for the full set of arguments.
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- Read [Improving Hugging Face Training Efficiency Through Packing with Flash Attention](https://huggingface.co/blog/packing-with-FA2) for benchmarks and a deeper walkthrough.
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